Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs28461408 chr5:176662293 G/A 3.18E-8 282 4.93 26.3 25.78 KM Plot
KIRP rs28488200 chr4:16380368 C/T 7.32E-8 287 25.67 26.4 12.53 KM Plot
KIRP rs28500703 chr11:123517311 T/C 0.000175 280 25.6 29.38 2.07 KM Plot
KIRP rs28504591 chr1:165691768 A/G 1.2E-6 288 17.13 44 23.63 KM Plot
KIRP rs28505323 chr10:124809491 T/C 0.000119 287 25.4 28.17 18.33 KM Plot
KIRP rs28529158 chr2:47174954 A/G 3.13E-7 286 25.5 32.55 10.97 KM Plot
KIRP rs28548633 chr10:74872008 G/A 9.99E-15 288 26.37 22.8 5.6 KM Plot
KIRP rs28550270 chr11:123517087 C/A 0.000169 281 25.6 30.7 2.07 KM Plot
KIRP rs28551645 chr3:195822889 C/T 1.2E-5 279 25.63 22.8 10.97 KM Plot
KIRP rs28552449 chr22:40854814 G/A 8.51E-5 287 26.4 22.8 12.1 KM Plot
KIRP rs28553402 chr3:124496158 G/A 3.86E-5 286 26.1 25.65 16.47 KM Plot
KIRP rs28575454 chr4:5504427 G/A 1.01E-5 281 25.93 30.9 13.27 KM Plot
KIRP rs2862061 chr5:156444865 T/G 1.58E-7 287 12.78 25.18 26.2 KM Plot
KIRP rs2862062 chr5:156445677 C/T 4.23E-6 282 14.85 23.58 26.1 KM Plot
KIRP rs2862063 chr5:156445686 T/C 3.89E-6 283 14.85 23.58 26.2 KM Plot